Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015934873.1_cds_XP_016480876.1_72272
CDS Infomation

[gene=LOC107801966] [db_xref=GeneID:107801966] [protein=pentatricopeptide repeat-containing protein At2g31400, chloroplastic-like] [protein_id=XP_016480876.1] [location=join(16858..16960,17179..18751,19570..19786,20891..21075,21162..21426)] [gbkey=CDS]
Sequence

ATGCCACGTAAGCTTACAGCTAGAAAAGAAGCCGTACGGTCAGCCGGCAGCGGCGGACAA
AACAGAGTAAGAGGAGAGAGAAACGATGTGGTAAGATTACACTCCCTATCAAAACCACCC
CCTANCTCATTTGCTGAGCAGGCTCTTACAGAAGCTAGCAAAAATGGCGCCGTTTTGGAC
CAGGTTTTGTTGACTTTTGAGTCAAAGCTATTGGGTTCTGATGATTATACGTTTTTGTTT
AGGGAGCTGGGGAATAAAGGGGAGTGGTTAGCTGCTATGCGTTGCTTCGAATTTGCTGTT
CGTCGCGAAAGGAGGCGAAATGAGCAAGGTAAATTAGCTAGTTCAATGATTAGTATACTT
GGTAGATCAGGTAAAGTTGAGTTAGCTGAAAAAGTGTTTGAAACTGCTGTGAATGAGGGT
TATGGTAATACTGTTTACGCTTATTCTGCCTTGATTGGCGCTTATGCAAAGAGTGGGTAT
TGTAACGAGGCGATTAGAGTCTTTGAGACCATGAAAGATTCCGGCTTGAAGCCTAATTTA
GTGACTTATAACGCGTTGATCGATGCTTGTGGAAAAGGGGGTGCTGATTTTAAGAGGGCG
TCGGAGATTTTTGATGAAATGCTGAGAAATGGGGTGCAACCTGATAGGATTACCTTTAAT
TCGCTGCTGGCTGTTTGTAGTGGTGCGGGGTTATGGGAGACCGCGAGGGGTTTGTTTAAT
GAGATGGTTTATAGAGGAATTGATCAGGATATATACACGTATAATACATTCTTGGACGTA
GCTTGCAATGGGGGGCAGGTAGATGTTGCTTTTGATATTATGTCTGAGATGCACGCGAAG
AATATCTTGCCCAACCAAGTTACTTACAGTACTGTGATTCGTGGGTGTGCAAAGGCGGGG
AGATTAGACAAAGCGTTGAGTTTGTTTAATGAGATGAAGTGTGCAGGCATAACGTTGGAC
AGGGTTTCTTACAATACTTTACTTGCTATATATGCTAGCTTGGGAAAGTTTGACGAGGCT
CTTAGTGTTAGCAGGGAGATGGAGAGTATGGGAATTAAGAAAGATGTTGTCACTTACAAT
GCTCTTCTGGATGGGTTTGGCAAACAGGGAAGGTATGCTAAGGTTAAGCAGTTGTTTGCG
GAGATGAAAGCTGAAAATCTTTCACCTAACTTATTGACGTACTCTACGTTGATCAGTGTG
TATTTGAAAGGAGGTTTGTATCAGGACGCGGTGGAGGTCTATAAGGAATTTAAGCGCCAA
GGTCTGAAGGCAGATGTCGTTTTTTATAGCAAACTTATTGATGCCTTGTGTAAGAAAGGC
CTCGTGGAGTATTCTTCATTGTTGCTCAATGAAATGATCAAGGAAGGGATACAACCAAAT
GTTGTTACATACAATTCTATAATCAATGCTTTTGGTGAATCAACAAGCAATGATTGTGGA
TCAGATAATGTCACACAGATTGTATCCATTGTTCCTGAGAGTAAGGTGGTATGCACTGCA
GAGGATAATATCATTAAGATTTTTGAGCAATTAACTGCTCAAAAGACAGCTAACGGGAAG
AAAACTAATGGTGAAAAACAGGACTTGCTCTGTATTTTGGGTGTTTTCCATAAGATGCAT
GAATTACAAATAAAGCCTAATGTAGTCACATTTTCAGCAATCCTGAATGCTTGCAGCCGG
TGCAGTTCATTTGATGAAGCTTCGCTCTTACTCGAAGAACTTCGCCTATTTGATAATCAA
GTTTATGGGGTGGCACATGGACTTCTCATGGGTCAGCAGGAAGGTGTATGGAAACAAGCT
CTATCTCTTTTCAATGAAGTGAAGCAGATGGACTCTTCAACTGCATCTGCCTTTTACAAT
GCTTTGACTGACATGTTGTGGCATTTTGGTCAGAAACAAGGTGCTCAACTGGTTGTGCTT
GAAGGAAAACGCCGGGAAGTGTGGGAAAACACATGGTCCACTTCTTGCTTGGATCTGCAT
TTGATGTCTTCAGGGGCTGCATGTGCAATGGTCCACGCATGGTTGCTTAGTATAAGGTCT
ATTGTGTATGGAGGCCATGAGCTACCAAAGATATTGAGCATTTTGACTGGCTGGGGCAAG
CATAGCAAGATTACAGGTGATGGCGCCCTGAAACGAGCGATTGAGGGCCTGCTCACAAGC
ATAGGTGCACCGTTCCAGATAGCCAAGTGTAATATCGGAAGGTTTATATCCACGGGAGCG
GTGGTAGCTGCCTGGTTGAGAGAATCAGGCACACTGGAAGTACTTGTTCTTCACAATGAT
AGAAGTCACTTGGGCGCGACAAGGTTTGGTCAAATTTCTAATTTACAGCCGTTGCCATTG
TAG

Peptide Sequence

PEP ID

XP_016480876.1
PEP Infomation

PREDICTED: pentatricopeptide repeat-containing protein At2g31400, chloroplastic-like [Nicotiana tabacum]
Sequence

MPRKLTARKEAVRSAGSGGQNRVRGERNDVVRLHSLSKPPPXSFAEQALTEASKNGAVLD
QVLLTFESKLLGSDDYTFLFRELGNKGEWLAAMRCFEFAVRRERRRNEQGKLASSMISIL
GRSGKVELAEKVFETAVNEGYGNTVYAYSALIGAYAKSGYCNEAIRVFETMKDSGLKPNL
VTYNALIDACGKGGADFKRASEIFDEMLRNGVQPDRITFNSLLAVCSGAGLWETARGLFN
EMVYRGIDQDIYTYNTFLDVACNGGQVDVAFDIMSEMHAKNILPNQVTYSTVIRGCAKAG
RLDKALSLFNEMKCAGITLDRVSYNTLLAIYASLGKFDEALSVSREMESMGIKKDVVTYN
ALLDGFGKQGRYAKVKQLFAEMKAENLSPNLLTYSTLISVYLKGGLYQDAVEVYKEFKRQ
GLKADVVFYSKLIDALCKKGLVEYSSLLLNEMIKEGIQPNVVTYNSIINAFGESTSNDCG
SDNVTQIVSIVPESKVVCTAEDNIIKIFEQLTAQKTANGKKTNGEKQDLLCILGVFHKMH
ELQIKPNVVTFSAILNACSRCSSFDEASLLLEELRLFDNQVYGVAHGLLMGQQEGVWKQA
LSLFNEVKQMDSSTASAFYNALTDMLWHFGQKQGAQLVVLEGKRREVWENTWSTSCLDLH
LMSSGAACAMVHAWLLSIRSIVYGGHELPKILSILTGWGKHSKITGDGALKRAIEGLLTS
IGAPFQIAKCNIGRFISTGAVVAAWLRESGTLEVLVLHNDRSHLGATRFGQISNLQPLPL

Transcript Sequence

Gene sequence data has not been registered.